PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G386273_P01
Common NameLOC103625846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 165aa    MW: 18025.6 Da    PI: 11.5845
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G386273_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-1157110154
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                        e++++r+rrk +NR++ArrsR+RK++++eeL+ +++ L ++ ++L  +l+ l  
  GRMZM2G386273_P01  57 EERRRRQRRKLSNRLSARRSRARKQQRLEELRAEAARLRGQKRELEARLQALAR 110
                        6889*********************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-853110No hitNo description
SMARTSM003381.2E-855121IPR004827Basic-leucine zipper domain
PfamPF001704.2E-757109IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.90959122IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.66E-861112No hitNo description
PROSITE patternPS0003606479IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MLSVQEALEL ASSSCGTTMD VTTCGFTPWG PESCPGLEQV MASTPAAAAR HPDPEEEERR  60
RRQRRKLSNR LSARRSRARK QQRLEELRAE AARLRGQKRE LEARLQALAR HGLAVRCQNA  120
RLRAEAAALA RRLLAIASYA QQPQHKAGVA PAPAAALLGL ASLTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15766ERRRRQRRKL
27380RRSRARKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G386273
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G386273_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766450.0EU976645.1 Zea mays clone 986028 ocs element-binding factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644467.11e-111ocs element-binding factor 1-like
TrEMBLB6UHD01e-110B6UHD0_MAIZE; Ocs element-binding factor 1
STRINGGRMZM2G386273_P011e-110(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138452429
Representative plantOGRP1264445
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]