PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G379608_P01
Common NameZm.137096
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 264aa    MW: 29987.8 Da    PI: 6.8905
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G379608_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.82.2e-32111491128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....s 80 
                        lp+G++F+P+d+el+++ ++k+  ++       ++++   ++e  +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r ++    +
  GRMZM2G379608_P01  11 LPKGVKFDPSDQELIWHLMAKH-GKSGikphpfIDEFIPtVEEDeGICYTHPQKLP-GVKQNGSVSHFFHRTFKAYNTGTRKRRRINtddaD 100
                        799************7666554.44443555442322222333336**********.667778899*****************964434667 PP

                NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         +W++tgk+k+vl+ +g++ g+kk++v+y    +  k+ekt+Wv+h+y+l
  GRMZM2G379608_P01 101 VRWHKTGKTKPVLV-DGKHLGCKKIMVLYisPLKGGKAEKTNWVIHQYHL 149
                        89************.999***********6523777778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-363168IPR003441NAC domain
PROSITE profilePS5100530.81311168IPR003441NAC domain
PfamPF023657.8E-1412149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSQVVHQWPG LPKGVKFDPS DQELIWHLMA KHGKSGIKPH PFIDEFIPTV EEDEGICYTH  60
PQKLPGVKQN GSVSHFFHRT FKAYNTGTRK RRRINTDDAD VRWHKTGKTK PVLVDGKHLG  120
CKKIMVLYIS PLKGGKAEKT NWVIHQYHLG AGEDERDGEY VVSKLFFQQQ FKPGDKNAQE  180
LTTSDDLESM AAESNLPDFT TLPTDKHVGT VQEVVHNPEH NLYQLNRNCE ISIEETVVLP  240
PSVKTIKDGD NLQSQDQKLW EGDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892RKRRR
28993KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.202690.0meristem| ovary| pollen| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G379608
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G379608_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558620.0BT055862.1 Zea mays full-length cDNA clone ZM_BFb0341H11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146652.10.0putative NAC domain transcription factor superfamily protein
RefseqXP_008649294.10.0PREDICTED: uncharacterized protein LOC103629975 isoform X1
RefseqXP_008649295.10.0PREDICTED: uncharacterized protein LOC103629975 isoform X2
SwissprotQ6NQK23e-87NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A096R6K00.0A0A096R6K0_MAIZE; Uncharacterized protein
TrEMBLA0A096THQ90.0A0A096THQ9_MAIZE; Uncharacterized protein
STRINGGRMZM2G078954_P010.0(Zea mays)
STRINGGRMZM2G379608_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-88NAC family protein