PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G378653_P01
Common NameLOC100273300, ZEAMMB73_992623
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 359aa    MW: 37621.5 Da    PI: 9.5015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G378653_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.4e-09190237455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  GRMZM2G378653_P01 190 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 237
                        8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.78E-10184241No hitNo description
SuperFamilySSF474593.14E-15184255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14186254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009054anatomyinflorescence bract
PO:0020136anatomyear inflorescence
PO:0007001developmental stageearly whole plant fruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAPLSPTPAS ASAPVSSSPR SLVPDASAAP MRPASPPQEL PAAGGEIQAA LAPANASTAG  60
ARGGGGSFTA LLGLPTSQAM ELLLPRTTPP ALATAPAPTF PSDPHLVDRA ARLSTFAPPS  120
PSPSSTSPAR PLPAAANAGK RKADPVDRAS KGKAAKKGKT AEEKLAGGDG DDEKPAYVHV  180
RARRGQATDS HSLAERARRE KINARMELLK ELVPGCSKVS GTALVLDEII NHVQSLQRQV  240
EYLSMRLAAV NPRVDFGGLD SFLTTECGRI AGFNCKNGID LEQVTWPEMG VHGARQLMQL  300
QQQFWHGDLT HPHQVASQWE KRGDGHPPVF SNSSPSLFGY DLTSSGAQQT PASKLKTEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.188640.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G378653
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G378653_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407290.0BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658256.10.0PREDICTED: uncharacterized protein LOC100273300 isoform X1
SwissprotQ8VZ025e-66BH048_ARATH; Transcription factor bHLH48
TrEMBLK7VBC10.0K7VBC1_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G378653_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.16e-52bHLH family protein