PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G369629_P01
Common NamebHLH123, Zm.32829
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 272aa    MW: 29041 Da    PI: 9.9942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G369629_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-1067111554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++E+rRR+riN  +++Lr+++P a       ++Ka+ L ++v  +k+L
  GRMZM2G369629_P01  67 HSAAEKRRRERINAHLATLRRMIPDA-----SQMDKATLLARVVCQLKDL 111
                        99***********************9.....5799999998888777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-1253115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.95462111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1166118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.97E-1067114No hitNo description
PfamPF000107.1E-867111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-968117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.4E-4155215No hitNo description
CDDcd048731.19E-6157221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MASTASQPFQ EGKQHLHLNH GGRALHSAYG GTAAWPASSV TPPLTRLETP ASSSKSTAEA  60
RQALKIHSAA EKRRRERINA HLATLRRMIP DASQMDKATL LARVVCQLKD LKKKSAETTQ  120
PPLATIPGET NEIAVVCCTG TASTAYERAA ATYIRASVSC DDRPGLHADL AGALRAMRLR  180
PLRADMAALG GRAQCDFVLC REDGAGCRTL KALEEGVRQA LAKAAFPETP PYGCNAARSR  240
RQRLAGSHCV LHGHGHGHGH GHGLHVIGEH GW
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G369629
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G369629_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9735050.0EU973505.1 Zea mays clone 399867 DNA binding protein mRNA, complete cds.
GenBankBT0689000.0BT068900.1 Zea mays full-length cDNA clone ZM_BFc0165O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152068.10.0DNA binding protein
RefseqXP_008647968.10.0PREDICTED: DNA binding protein isoform X1
RefseqXP_008647969.10.0PREDICTED: DNA binding protein isoform X1
TrEMBLB6U8E00.0B6U8E0_MAIZE; BHLH transcription factor
STRINGGRMZM2G369629_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-22bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]