PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G361847_P07
Common Namegpm517
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 240aa    MW: 26366.8 Da    PI: 8.4525
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G361847_P07genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.3e-102766544
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                       k  rr+++NReAAr+sR+RKka++++Le    +L +  ++
  GRMZM2G361847_P07 27 KTMRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 66
                       7789************************855444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-62286IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.452569IPR004827Basic-leucine zipper domain
CDDcd147082.23E-212779No hitNo description
PfamPF001703.5E-72768IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-72770No hitNo description
Gene3DG3DSA:1.20.5.1704.9E-82872No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
PfamPF141441.4E-32109181IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MENGSGAVVP SNSSDRSDRS DKPLDQKTMR RLAQNREAAR KSRLRKKAYV QQLESSKLKL  60
AQLEQELQKA RQQGIFISSS GDQTHAMSGN GALTFDIEYA RWLEDQNKQI NELRTAVNAH  120
ASDSDLRLIV DGIMAHYDEI FKVKGVAAKA DVFHILSGMW KTPAERCFLW LGGFRPSELL  180
KQSSQQAEDA LSQGMEALQQ SLAETLAGSL GPAGSSGNVA NYMGQMAMAM GKLGTLENFL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1566620.0endosperm| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G361847
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G361847_P07
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615860.0BT061586.1 Zea mays full-length cDNA clone ZM_BFb0161M21 mRNA, complete cds.
GenBankJX4699370.0JX469937.1 Zea mays subsp. mays clone UT3196 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333859.11e-162uncharacterized protein LOC100279481
RefseqXP_008651318.11e-162uncharacterized protein LOC100279481 isoform X2
RefseqXP_008651320.11e-162uncharacterized protein LOC100279481 isoform X2
RefseqXP_020396043.11e-162uncharacterized protein LOC100279481 isoform X2
RefseqXP_020396044.11e-162uncharacterized protein LOC100279481 isoform X2
RefseqXP_020396045.11e-162uncharacterized protein LOC100279481 isoform X6
RefseqXP_020396047.11e-162uncharacterized protein LOC100279481 isoform X6
SwissprotQ7X9931e-143TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLA0A1D6INY91e-175A0A1D6INY9_MAIZE; Transcription factor TGA6
STRINGGRMZM2G361847_P011e-161(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-106TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]