PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G361659_P01
Common NameLOC100381405, ZEAMMB73_784560, Zm.28508
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 444aa    MW: 48704 Da    PI: 9.9011
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G361659_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.25.9e-2359124171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        rk+ksL+ll+++f+ l+++ + + + l+e+ak L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  GRMZM2G361659_P01  59 RKDKSLGLLCSNFVVLYNRDDVESIGLDEAAKCL---GV--ERRRIYDIVNVLESVGILVRKAKNRYTWIG 124
                        79****************9999************...**..****************************98 PP

2E2F_TDP79.82.4e-25203283171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                        rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  GRMZM2G361659_P01 203 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEgheetNMRTKVRRLYDIANVLSSLNLIEKihqgdSRKPAFRWLG 283
                        79*********************************************************************9*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-2555125IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.71E-1658123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-2759124IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-2060124IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-23200284IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-33203283IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-20204283IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.26E-13205284IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MTASFSSVAE VAVPAAAAVM ASALPQEQQQ ARPRPRPMHA GGGGGGGGGA NGRHHAYSRK  60
DKSLGLLCSN FVVLYNRDDV ESIGLDEAAK CLGVERRRIY DIVNVLESVG ILVRKAKNRY  120
TWIGFGGVSI SLRELKERAL REKSGLAPLQ TEQQSAATIS EDEDDDTLAN PGAYIETERL  180
SQTVDKPSGK PGASGCRLRS DHRKEKSLGL LTQNFVKLFL TMEVDTISLD EAAKLLLGEG  240
HEETNMRTKV RRLYDIANVL SSLNLIEKIH QGDSRKPAFR WLGRATLNTE NGVTVAVPPP  300
GKIASKKRAF GTELTNIDMH RSNLDSKNKK KAKLVQSSGD VLTNCKLAVR SRLGQGKQSG  360
FVYGPFHPSG ARKHGLDGGN KPGQRERAED WESLSASFRP QYQNQALSDL FVHYVDAWKT  420
WYSEFAQGSS IMQQHFGHPV NHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-40582753228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.285080.0cell culture| endosperm| meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G361659
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G361659_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611850.0BT061185.1 Zea mays full-length cDNA clone ZM_BFb0119O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307734.10.0hypothetical protein
TrEMBLK7U6480.0K7U648_MAIZE; Uncharacterized protein
STRINGGRMZM2G361659_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-100DP-E2F-like 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]