PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G359599_P01
Common NameZEAMMB73_426908
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 173aa    MW: 19579.4 Da    PI: 8.7698
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G359599_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP58.52.8e-18111122102
                TCP  22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceaesssssasnsssg..... 88 
                        +Rls+ +a++f +Lqd+LGfdk+skt++WLl q+kp i+ l++                     +s+s s                      
  GRMZM2G359599_P01   1 MRLSVGVAREFLALQDRLGFDKASKTLNWLLAQSKPPIDCLVDAadqvavvtggrptlvkgreqGSNS-ST---------------Ccltdl 76 
                        8*****************************************99555555555555555554422222.22...............133333 PP

                TCP  89 .....................kaaksaakskksqk 102
                                              + +s+++ kk+ +
  GRMZM2G359599_P01  77 rwdkrlncskcvtycfqilgvGKTTSQQEIKKAYH 111
                        33333333334445555555533333334444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.403141IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-161134IPR005333Transcription factor, TCP
SMARTSM002711.6E-1189146IPR001623DnaJ domain
PROSITE profilePS5007613.37490157IPR001623DnaJ domain
SuperFamilySSF465652.36E-1491127IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.1E-1591139IPR001623DnaJ domain
PfamPF002261.9E-1391134IPR001623DnaJ domain
CDDcd062571.33E-1491129IPR001623DnaJ domain
PRINTSPR006251.8E-1092110IPR001623DnaJ domain
PRINTSPR006251.8E-10110125IPR001623DnaJ domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRLSVGVARE FLALQDRLGF DKASKTLNWL LAQSKPPIDC LVDAADQVAV VTGGRPTLVK  60
GREQGSNSST CCLTDLRWDK RLNCSKCVTY CFQILGVGKT TSQQEIKKAY HKLALRLHPD  120
KNPGDEVAEA DIEEFEAKYR GSDYEKTDLK DLYTKYKGNM NRNNYLLYHI VKI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.398041e-101tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G359599
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G359599_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614985e-99EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7277625e-99KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6PMZ18e-79A0A1D6PMZ1_MAIZE; Chaperone protein dnaJ 6
STRINGGRMZM2G359599_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-12TCP family protein