PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G355469_P01
Common NameLOC103641669, ZEAMMB73_542366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 346aa    MW: 36654.5 Da    PI: 6.1766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G355469_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.2e-15153199455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+++Lq
  GRMZM2G355469_P01 153 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVRDLQ 199
                        699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.586149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17153206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12153199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-15154203No hitNo description
SuperFamilySSF474591.57E-16154208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-15155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDMEDSGQFM QWAMATLQHD EDQAVDYPID DGRGGATFPS LRALREASSQ AAEMIQEPLA  60
AANSRCGGDG GTAAAGNNIS GTAPRRSSSG SAVIQPLRWN FGAGAAAPPG RDGVPVPAEA  120
AATGSLLPDL AYGPPPTRKQ AVLKSVGSIY AQDHIIAERK RREKINQRFI ELSTVIPGLK  180
KMDKATILSD ATRYVRDLQE KIKAHEDGGG SNDRGIVESW VLVKKPCVAA PDEDAGSSPS  240
WDSSGTTAPS PATNPLPEIE ARFLNKNVTV RIHCVGVKGV VVRVLAELEE LHLSIIHANV  300
VPFHACTLII TITAKVDEGF TVTAEEIVGR LKTSACINAP AKPLLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G355469
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G355469_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659952e-47AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663222.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLK7UIM30.0K7UIM3_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G355469_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1191336
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-30bHLH family protein