PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G350312_P01
Common NameLOC100282178
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 270aa    MW: 29659.3 Da    PI: 6.1288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G350312_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.2e-053886254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +  + erE+  Rd++N+ f eL  +l  +     + + Ka iL+ +++ +++L
  GRMZM2G350312_P01 38 KIHKAEREKLKRDHLNDLFVELGNMLEAD----RQNNGKACILTDTTRILRDL 86
                       667889********************997....57788888988888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1133105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.3723686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.001023790No hitNo description
Gene3DG3DSA:4.10.280.103.0E-837106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVPSEMGSVA TAVSTPAADK LLHGPISGKK CKKPGPRKIH KAEREKLKRD HLNDLFVELG  60
NMLEADRQNN GKACILTDTT RILRDLLVQV DSLRKEHSDL QNESHYVTME RDEMQDENGV  120
LRKEISELQN ELTMRVSGSP AGWGHGTARS DPPLPHSTAV FSSEQAMQPP TIASVVFPLQ  180
QPLAPSAMTK PPHAAPPLEL KLFPEVASAE GHEPCEDHKA PNHVARPQAR YPTQSASWPV  240
NLFSGLPRME DEQCSSSTSG SSREDNTDIE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.216540.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G350312
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G350312_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0677370.0BT067737.1 Zea mays full-length cDNA clone ZM_BFc0145G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148562.10.0amelogenin precursor like protein
RefseqXP_008676027.10.0PREDICTED: amelogenin precursor like protein isoform X1
RefseqXP_008676033.10.0PREDICTED: amelogenin precursor like protein isoform X1
RefseqXP_008676036.10.0PREDICTED: amelogenin precursor like protein isoform X1
TrEMBLB8A2P80.0B8A2P8_MAIZE; BHLH transcription factor
STRINGGRMZM2G350312_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6793812
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-28bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]