PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G344521_P01
Common NameZm.62160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 513aa    MW: 58094.6 Da    PI: 8.3769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G344521_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.3e-122313121596
                        -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                 B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                        +l + k++a +h  +k  ++ +tle+  ++++W  k+  r  s++ +l + W +Fv++n+++egD+++F  +++  + +++v +
  GRMZM2G344521_P01 231 LLGITKEYAIAHFPDK--TTNVTLETpGKSKKWHPKFYKRDESRKNLLMGQWLDFVRDNHVQEGDICLFLPTKDeIRHTFMVYI 312
                        578999***9997564..457*****5566*******6688888899999*******************977664555566655 PP

2B347.82.6e-154435103199
                        .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        ++++  +l + +g++We k+ + +++++ +l +GW +F++ ngL++gD+++F+l+++ s+ ++ v+++rk
  GRMZM2G344521_P01 443 TKGQN-ILLQCKGKTWEAKMMFHNGRRW-FLNGGWPDFARGNGLRVGDMCLFELKKKkSTLTMAVHIIRK 510
                        33333.456679********98888877.6999**********************888*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.0E-8254IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.36E-7356IPR011011Zinc finger, FYVE/PHD-type
PROSITE patternPS013590550IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.7E-17208314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16209314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-16216313No hitNo description
SMARTSM010190.003216316IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828217316IPR003340B3 DNA binding domain
PfamPF023623.6E-10232312IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20405510IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-18406510IPR015300DNA-binding pseudobarrel domain
CDDcd100179.77E-19411509No hitNo description
SMARTSM010191.1E-6413511IPR003340B3 DNA binding domain
PfamPF023621.5E-13431510IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605448511IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MNTVCEVCGD IGYRQLLLCC RDCKRCAVHQ YCLDKVVYEA SLIKWFCYEC LQRRGEVTRI  60
SSLEKLSSER PLSQVHSRSP VQQLITKSVE SVRDAGPYSP NGGCEESFSC PGIKNTPSVR  120
ERSVDPINIS SDSHDTIEAS ESSERFMECQ KASLCRRRKT VKMAMVSSSS EESGEDTISE  180
NVSLGYVLAC RSSLSKAQKK RVTKLIQEIQ PEFTVFISIM RMSNVKLPGP LLGITKEYAI  240
AHFPDKTTNV TLETPGKSKK WHPKFYKRDE SRKNLLMGQW LDFVRDNHVQ EGDICLFLPT  300
KDEIRHTFMV YILHETTHSR CGAGFQRVGP CLGGASSAKM ASEVHIEDEP TAGEHVSSDS  360
DMPENSHEPL ESGDSDDPFE PPYFVPCRSP LSKSQKRMVE QRVRAIRSEV PICVAVMKNN  420
NVGIAQRWML ELCSRYASVY LPTKGQNILL QCKGKTWEAK MMFHNGRRWF LNGGWPDFAR  480
GNGLRVGDMC LFELKKKKST LTMAVHIIRK EQF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.621600.0embryo| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G344521
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G344521_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665132.10.0PREDICTED: uncharacterized protein LOC103643733
TrEMBLA0A096TBL50.0A0A096TBL5_MAIZE; Uncharacterized protein
STRINGGRMZM2G344521_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-06B3 family protein