PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G342424_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 155aa    MW: 17135.1 Da    PI: 6.5267
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G342424_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.3e-116598336
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36
                       e kr rr+ +NRe+ rrsR+RK+a++  Le  vk
  GRMZM2G342424_P01 65 ETKRIRRMVSNRESTRRSRRRKQAQLSDLESQVK 98
                       579****************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.008363134IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.5086598IPR004827Basic-leucine zipper domain
PfamPF001705.3E-96598IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.89E-867102No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-767102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDGGSWWYGN VRTPNPVMSQ AASISASPGL TISANHALES ESDSDSESLY EVEGVPYERG  60
NRSIETKRIR RMVSNRESTR RSRRRKQAQL SDLESQVKMA EDMVARSVVS CDLGDLGLAP  120
YVNSRKMCQA LNVLTGLDLL GSDAFTYGAR PHDTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986RRSRRRKQ
28186SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.102931e-138cell culture| ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G342424
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G342424_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0618211e-135BT061821.1 Zea mays full-length cDNA clone ZM_BFb0185P06 mRNA, complete cds.
GenBankEU9668411e-135EU966841.1 Zea mays clone 297691 light-inducible protein CPRF-2 mRNA, complete cds.
GenBankKJ7281651e-135KJ728165.1 Zea mays clone pUT6435 bZIP transcription factor (bZIP17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150404.15e-73uncharacterized protein LOC100284034
RefseqXP_008658673.17e-73light-inducible protein CPRF-2 isoform X1
SwissprotQ6H5001e-31RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A1D6GVL61e-110A0A1D6GVL6_MAIZE; Basic leucine zipper 9
STRINGGRMZM2G342424_P011e-111(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]