PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G327189_P01
Common NameLOC100381571, Zm.33041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Dof
Protein Properties Length: 229aa    MW: 24188.5 Da    PI: 10.5074
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G327189_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof91.47.6e-2966121458
             zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 
                        + l+cprC s++tkfCy+nny++ qPr++C+aCrryWt+GGalr v   + grr+ 
  GRMZM2G327189_P01  66 EPLPCPRCGSRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVASASpGRRRP 121
                        6789*****************************************98765255554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.3E-2667120IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.52768122IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-1770108IPR003851Zinc finger, Dof-type
PROSITE patternPS01361070106IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAANLPDADA AGFKLFGKVI QPPDAQKRGA DEGDDPTPQT ALPPPPPPPP PPPPQQAPAA  60
GGPGAEPLPC PRCGSRETKF CYFNNYNVRQ PRHLCRACRR YWTAGGALRR VASASPGRRR  120
PRPTARSAPV AAAASSAPAA AEEDSFGGQK DAAGLLCDRE RVQFGRQSKR PPLQHARVTE  180
QCRCRSSKKT CFITASNELV RVLANPTGVL NPSAASLLAP RCAALRAGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.330410.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G327189
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G327189_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0616550.0BT061655.1 Zea mays full-length cDNA clone ZM_BFb0169J01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167867.21e-161uncharacterized protein LOC100381571
TrEMBLA0A1D6NG261e-160A0A1D6NG26_MAIZE; Cyclic dof factor 2
STRINGGRMZM2G327189_P011e-160(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147161620
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34140.15e-20Dof family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]