PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G317160_P01
Common NameEREB26, LOC100384463
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 428aa    MW: 46321.9 Da    PI: 8.0397
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G317160_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44e-14147206155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  GRMZM2G317160_P01 147 SIYRGVTRHRWTGRYEAHLWDnTCRkEGqkRKgRQVYLGGYDKEDKAARAYDIAALKYWG 206
                        57*******************554454475337**********99************987 PP

2AP247.73.7e-15249301156
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        s y+GV+ +++ grW A+I  +     +k  +lg+f t++eAa+a++ a++k++ge
  GRMZM2G317160_P01 249 SIYRGVTKHHQHGRWQARIGRVAG---NKDLYLGTFATEQEAAEAYDIAALKFRGE 301
                        57****************988532...5**********99**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-11147206IPR001471AP2/ERF domain
CDDcd000181.25E-20147214No hitNo description
SuperFamilySSF541719.15E-17147215IPR016177DNA-binding domain
PROSITE profilePS5103219.124148214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-16148215IPR001471AP2/ERF domain
SMARTSM003801.6E-25148220IPR001471AP2/ERF domain
PRINTSPR003671.1E-6149160IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17249309IPR016177DNA-binding domain
PfamPF008477.3E-10249301IPR001471AP2/ERF domain
CDDcd000185.27E-23249310No hitNo description
Gene3DG3DSA:3.30.730.105.1E-18250308IPR001471AP2/ERF domain
SMARTSM003804.4E-32250314IPR001471AP2/ERF domain
PROSITE profilePS5103218.676250308IPR001471AP2/ERF domain
PRINTSPR003671.1E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSPPTNGAIS LAYAPSMMLG AGALTNPPLL PFDGFTDEDF LASADAALLG EAGTDQTLLL  60
LPSCPGANCC GGSSSDQGLG ALACEVTTAG SFSLLGQPAP GQVSWEVTTA VAADRNTFSR  120
ARDPAPSPPP SPALPLVQTT SQSQRTSIYR GVTRHRWTGR YEAHLWDNTC RKEGQKRKGR  180
QVYLGGYDKE DKAARAYDIA ALKYWGDNAT TNFPRENYIR EIQDMQNMNR RDVVASLRRK  240
SSGFSRGASI YRGVTKHHQH GRWQARIGRV AGNKDLYLGT FATEQEAAEA YDIAALKFRG  300
ENAVTNFEPS RYNLLAIAQR DIPILGRKLI QKPAPEAEDQ AALSARSFSQ SQQSSNSLPP  360
YFLTNLLQPL PSQHSLAQAL PSYNNLGFGE PSLYWPCPCG DPGEQKVQLG SKLEIVDGLV  420
QLANSAAN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.369130.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G317160
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G317160_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701980.0BT070198.1 Zea mays full-length cDNA clone ZM_BFc0189L07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170466.10.0uncharacterized protein LOC100384463
TrEMBLC0PPH90.0C0PPH9_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G317160_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-107AINTEGUMENTA-like 5