PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G314882_P01
Common NamebHLH128, TIDP3430, ZEAMMB73_905737
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 231aa    MW: 25348.9 Da    PI: 5.829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G314882_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-1165112454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++  rE+ RRd++N++f eL +++ +    ++ Kl+Ka iL  A + + +L
  GRMZM2G314882_P01  65 SKACREKMRRDKLNDRFLELSSVMNPG---KQAKLDKANILSDAARMVAQL 112
                        6789**********************9...9**************999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.06261112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-1362128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-864117No hitNo description
PfamPF000109.6E-965112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1366134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-867118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MMNCAGGGDP VEDFLISGAV DDEDLAIFCD GGLGIEGVNG DACGFEQSNL GKRGRDEPCS  60
SGLKSKACRE KMRRDKLNDR FLELSSVMNP GKQAKLDKAN ILSDAARMVA QLRGEAEKLK  120
ESNEKLRENI KDLKEEKNEL REEKVRLKVE KDRLEQQVKA MSVAPTGYVP HLPHPASYHP  180
AAFAPFVPPQ QAAGNKSAPI PAPFPGMAMW QWLPPTIVDT TQDPKLWPPN A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.677080.0cell culture| ear| embryo| endosperm| glume| meristem| ovary| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G314882
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G314882_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280060.0KJ728006.1 Zea mays clone pUT6139 bHLH transcription factor (bHLH128) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676877.11e-171PREDICTED: uncharacterized protein LOC100274393 isoform X1
SwissprotQ9FH372e-59ILR3_ARATH; Transcription factor ILR3
TrEMBLK7UT651e-171K7UT65_MAIZE; BHLH transcription factor
STRINGGRMZM2G314882_P041e-169(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.17e-46bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]