PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G310368_P01
Common NameZm.19143
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 237aa    MW: 24428.5 Da    PI: 9.0778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G310368_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-203283156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAaka++ a+++++g+
  GRMZM2G310368_P01 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAAKAYDSAAREFRGA 83
                       68********.**********83...36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.01E-303290No hitNo description
PfamPF008474.0E-143282IPR001471AP2/ERF domain
SMARTSM003801.9E-373396IPR001471AP2/ERF domain
PROSITE profilePS5103223.9993390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-323390IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-223391IPR016177DNA-binding domain
PRINTSPR003675.5E-113445IPR001471AP2/ERF domain
PRINTSPR003675.5E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAPRVADKSP LPPATGLGLG VGGGVGGVGM GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA KAYDSAAREF RGAKAKTNFP FPSQCSVASG AAGSASSNST VDSSGGGSGC  120
GIQAPMQAMP LPPALDLDLF HRAAAVNAVS TGMRFPFKGY PVACPTPQQY FFYEQAAAAA  180
SGYRMLKVAP PAVTVAAVAQ SDSDSSSVVD HSPSPPAVTA NKVGFELDLN WPPPAEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-223191364ATERF1
3gcc_A1e-223191364ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.191430.0aerial organ| ear| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G310368
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G310368_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2443570.0DQ244357.1 Zea mays clone 5439 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149766.11e-124uncharacterized protein LOC100283393
TrEMBLA0A096T5Q21e-172A0A096T5Q2_MAIZE; Uncharacterized protein
STRINGGRMZM2G310368_P011e-171(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-24erf domain protein 9