PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180568_P01
Common NameLOC103633471, TCP38, Zm.41834
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 323aa    MW: 33712.6 Da    PI: 8.2468
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180568_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.32.4e-33601811108
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssss 69 
                        aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a +ai+ l+++                       s   
  GRMZM2G180568_P01  60 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAAAIDGLPSLdcsfvfphaaasppggaaddaelS--- 148
                        6899*************************************************************999988776544444333322220... PP

                TCP  70 aseceaesssssasnsssg......kaaksaakskksqksaasal 108
                                    +s+ s++      +a  +++  +++q+s+a ++
  GRMZM2G180568_P01 149 ------------TSETSKSsvlslaNAPVDNTAAHSQQDSHAYNN 181
                        ............222222223444322222222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3262175IPR005333Transcription factor, TCP
PROSITE profilePS5136931.51563121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRDGGRVRM SRVLATGDER GMGEVAGVER AACKRPRGAL DGGGSGSAAA WPACRVARAA  60
AGGKDRHSKV VTARGLRDRR VRLSVPTAIQ FYDIQDRLGV DQPSKAIEWL IRAAAAAIDG  120
LPSLDCSFVF PHAAASPPGG AADDAELSTS ETSKSSVLSL ANAPVDNTAA HSQQDSHAYN  180
NNAAAGGGAF ADLILHCSAN NSSKPVQQQP TLAYYATQPP NAHSASAISF ETMLPHFSFL  240
QEQPHHAIAF DRGTLQSNAA VAAPLWPTSQ HACLLQRFAA SPADATGLPS FFLGSGAAGA  300
SPVVPANAEP RLQLWDFKQE RKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2368122155Putative transcription factor PCF6
5zkt_B6e-2368122155Putative transcription factor PCF6
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180568
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180568_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268040.0KJ726804.1 Zea mays clone pUT3063 TCP transcription factor (TCP38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653387.20.0transcription factor PCF8
SwissprotA2ZMR92e-90PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A060CZ250.0A0A060CZ25_MAIZE; TCP transcription factor (Fragment)
STRINGGRMZM2G180568_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-27TCP family protein