PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180452_P03
Common NameLOC100381413
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 289aa    MW: 32298.2 Da    PI: 5.427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180452_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12133181355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  GRMZM2G180452_P03 133 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 181
                        58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.78E-11128185No hitNo description
SuperFamilySSF474592.09E-17128193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17130191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9133181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-10136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMYSPPRTDP DREEEQCFSI GSNLLTSLDH YHTMDFDEPV VSPMTNAGMQ EGVQLYSSTG  60
DAQLNRNMNT GKCLEDGKRK GSGEDSSSLR SLGETSALQR EVSMECADEK AGDARAKRED  120
YVHVRAKRGQ ATNSHSLAER FRREKINERM KLLQDLVPGC NKITGKAMML DEIINYVQSL  180
QRQIEFLSMK LSAIGPGLNC DLDLQDILCT QDASSAFPGY NLQTSNVHIN LYRASEEGFS  240
HRNRIIPSPA NVHVTRNAQL SAFPQRGVIW NEELCSIASD RNADSMKVE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180452
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180452_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622160.0BT062216.1 Zea mays full-length cDNA clone ZM_BFb0227P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681598.10.0PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X5
RefseqXP_008681601.10.0PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X5
TrEMBLA0A096T3140.0A0A096T314_MAIZE; Uncharacterized protein
STRINGGRMZM2G180452_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-45bHLH family protein