PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179802_P01
Common Namecl29574_1(465)
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 484aa    MW: 53700.6 Da    PI: 5.1639
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179802_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-34251162101
                        HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
       HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                        Fl k+ye+++d++ + ++sws ++  sfvv+++ efa ++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F kg+k+
  GRMZM2G179802_P01  25 FLLKTYEMVDDPSSDAVVSWSdASDGSFVVWNQPEFAARMLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEYFVKGQKH 107
                        9********************66669****************************************999.........************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  93 llekikrkk 101
                        ll++i+r+k
  GRMZM2G179802_P01 108 LLKNIHRRK 116
                        *******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-5821115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-3621115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.27E-3321115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.5E-3025115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-182548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEVAGAREPG SGGGGGGGGG GPAPFLLKTY EMVDDPSSDA VVSWSDASDG SFVVWNQPEF  60
AARMLPTYFK HNNFSSFIRQ LNTYGFRKID PERWEFANEY FVKGQKHLLK NIHRRKPIHS  120
HSHQPGALPD NERALFEDEI DRLSREKAAL QADLWKFNQQ QSGAVNQLED LERRVLDMEQ  180
RQTKMLSFLQ QARKNPQFVR KLVKMAEESP IFADAFHKKR RLPGLECITD ATETATSFFD  240
DHSSSSRQEM GNLLNQHFSD KLKLGLCPAM AESNLITLST QSSHEDNGSP LGKHPDYERT  300
GMECLPLVPQ MMELSDTGTS ICPSKSVSFT TAANDDGFLP CHLNLSLASC PMDVVRSQIP  360
DANVNTVDEK DGPPEVTTPT MEKDDGMPDR CHDATQNQKE ASGHAGAAAD ATGRPHRGSQ  420
APPEEHTGPQ VVVNDKFWEQ FLTERPGCPE AEEASFTLRR DPDHTHAYDE GTGSDTRDMG  480
QLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231611517129Heat shock factor protein 1
5d5v_B5e-231611517129Heat shock factor protein 1
5d5v_D5e-231611517129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.760500.0embryo| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179802
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179802_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741540.0EU974154.1 Zea mays clone 441220 heat shock transcription factor like protein mRNA, complete cds.
GenBankBT0424090.0BT042409.1 Zea mays full-length cDNA clone ZM_BFb0221P10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141978.10.0uncharacterized protein LOC100274128
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A096T2P80.0A0A096T2P8_MAIZE; Uncharacterized protein
STRINGGRMZM2G179802_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-112HSF family protein