PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179069_P01
Common NameLOC103629246, Zm.155842
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Dof
Protein Properties Length: 365aa    MW: 37994.6 Da    PI: 9.0435
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179069_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1183.7e-3793151361
             zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                        e  lkcprCdstntkfCy+nnysl+qPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
  GRMZM2G179069_P01  93 EPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 151
                        56789************************************************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3676145IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3196150IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.72396150IPR003851Zinc finger, Dof-type
PROSITE patternPS01361098134IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MIFPPAFLQD SSSWNDNQHQ QQQHHHQQQG HGHLQIAVSG SGDANHELLQ QPIMGGALPD  60
GGGGGGGGGQ VGGPAKPMSM AERARLARIP LPEPGLKCPR CDSTNTKFCY FNNYSLTQPR  120
HFCRACRRYW TRGGALRNVP VGGGYRRHAK RAKPKQQQQQ HAAAGTGAAT GAMQQPPAGS  180
MASSAAACTA TTTMTTNALH AGPGGGMLPM LPPLLRLADF DAMSLGSSFS GISSMGKPGS  240
IGAACYPHSV GGLEQWRVQQ MQSFPFLHAM DQGPLGPPLA MAMAAPGGMF QLGLDTTSDN  300
SRGGGGGGED GSSAGEALHM MQATKRESYP AAPRAMYGDQ QHNHLAAAGG YTSYSTNAAA  360
GNHLL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.950.0pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179069
Function -- GeneRIF ? help Back to Top
  1. ZmDof3 functions in maize endosperm development as a positive regulator in the signaling system controlling starch accumulation and aleurone development.
    [PMID: 27709320]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179069_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX799350.0X79935.1 Z.mays Dof3 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307851.10.0dof zinc finger protein DOF3.6-like
TrEMBLA0A1D6LHP60.0A0A1D6LHP6_MAIZE; DNA binding with one finger3
STRINGGRMZM2G179069_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-39Dof family protein
Publications ? help Back to Top
  1. Qi X, et al.
    ZmDof3, a maize endosperm-specific Dof protein gene, regulates starch accumulation and aleurone development in maize endosperm.
    Plant Mol. Biol., 2017. 93(1-2): p. 7-20
    [PMID:27709320]
  2. Yanagisawa S
    A novel DNA-binding domain that may form a single zinc finger motif.
    Nucleic Acids Res., 1995. 23(17): p. 3403-10
    [PMID:7567449]