PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G178182_P01
Common NameLOC100194274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 295aa    MW: 30978.2 Da    PI: 6.9143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G178182_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-09121168455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  GRMZM2G178182_P01 121 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALVLDEIINYVQSLQ 168
                        8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17115184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-11115172No hitNo description
PROSITE profilePS5088815.447117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-16117181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEHGVAGASH GAPSFLFCNG AGAATADSAS LETSSGVLDT SPRGGGADSG GRKAPTKPRE  60
DSASASASFS FSSAHSKDSS SKGSTKNRGG KRGRSSKEVD EEEEPKGYIH VRARRGQATD  120
SHSLAERVRR ERISERMRVL QALVPGCDKV TGKALVLDEI INYVQSLQNQ VEFLSMKIAS  180
LSPVLYGFGM DTTDAFSTDH TTQKIEGMLQ LHHEALAVPS SALSRPPFEA IADSTHATAS  240
ASSPRSYELH GDGGGGGASI SFPQDGGGYM AQTVGGPRPE LFNQVVFSNH MCSFQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1194520.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G178182
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G178182_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0367750.0BT036775.1 Zea mays full-length cDNA clone ZM_BFb0138L14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667290.10.0PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X1
RefseqNP_001132785.10.0putative HLH DNA-binding domain superfamily protein
TrEMBLA0A096T1G80.0A0A096T1G8_MAIZE; Uncharacterized protein
TrEMBLB4FI370.0B4FI37_MAIZE; BHLH transcription factor
STRINGGRMZM2G178182_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-40bHLH family protein