PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G177110_P01
Common NameLOC100285965
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 212aa    MW: 21648.6 Da    PI: 8.7216
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G177110_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260911.5e-282104197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                        +C++C++lr++C++ Cvl+p +      +++q +++a+v+k+FG++ +++ll+a+pe +r+++++sl+yeA  r+ dPv+Gavg++ +++++
  GRMZM2G177110_P01   2 SCNGCRMLRKGCSDACVLRPSLqwidggAEAQGHATAFVAKFFGRAGLMSLLTAVPEPQRPAVFQSLLYEAAGRTIDPVSGAVGLLGAGSWH 93 
                        6*********************99999888999*********************************************************** PP

             DUF260  87 leqlkaelall 97 
                        l+q+++e++l+
  GRMZM2G177110_P01  94 LCQAAVETVLR 104
                        *****999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.7591108IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-242102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSCNGCRMLR KGCSDACVLR PSLQWIDGGA EAQGHATAFV AKFFGRAGLM SLLTAVPEPQ  60
RPAVFQSLLY EAAGRTIDPV SGAVGLLGAG SWHLCQAAVE TVLRGGAIAP LPESDSDGAR  120
RGASAVAARR AVGCSTFSTA KRAPASVGAP PEPSCDLGLW LSPGSPPATG ERRRRRRPGT  180
PSMTSEESVT TMSGGGGGGG GGREPELLNL FV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177ERRRRRRP
2171176RRRRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G177110
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G177110_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749170.0EU974917.1 Zea mays clone 461098 seed specific protein Bn15D17A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152326.11e-125uncharacterized protein LOC100285965
SwissprotQ9FN111e-61LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SN231e-61LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1D6F0531e-147A0A1D6F053_MAIZE; Seed specific protein Bn15D17A
STRINGGRMZM2G177110_P011e-148(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-58LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]