PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G176289_P02
Common NamebHLH11, LOC100273484, ZEAMMB73_385296
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 342aa    MW: 35826.6 Da    PI: 8.5574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G176289_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09153200455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  GRMZM2G176289_P02 153 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 200
                        8*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576133No hitNo description
SuperFamilySSF474591.83E-16147214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-10147204No hitNo description
Gene3DG3DSA:4.10.280.104.6E-16149211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MARCRGTAES LCQGRLDLDD DKFGAMCTTA FGCLQEWPDL GAMCGANLGV PAMAGNGNES  60
SCSGSGGSRK RKPDAYDGLD ATGGANDMSK RPRGKRLSGI SEIVAPGKGK QERPKAGTKK  120
KAEAASAAAA AAAAGHKTDY IHVRARRGQA TDSHSLAERV RRERISERMR YLQELVPGCS  180
KVTGKAGMLD EIINYVQSLQ KQVEFLSMKI AASNPVVSFD IVEDLFGRQL KQSRRSPAAA  240
LPAMALPAGQ LEPSCLQMSH MPQMHPSAAA NSTGFGLDMV VNNPYAPAGA SCPVSAAASV  300
SVAAGPSTTE PCLNVNGTAA WDIGSRNLFS GFVAQFQSVE SE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1001500.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G176289
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G176289_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412380.0BT041238.1 Zea mays full-length cDNA clone ZM_BFc0191L13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141393.10.0putative HLH DNA-binding domain superfamily protein
TrEMBLB4FVV00.0B4FVV0_MAIZE; BHLH transcription factor
STRINGGRMZM2G176289_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-36cryptochrome-interacting basic-helix-loop-helix 1