PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G176141_P01
Common NameLOC100279487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 348aa    MW: 36483.5 Da    PI: 5.0566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G176141_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.7e-14112158354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++ +++k+L
  GRMZM2G176141_P01 112 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 158
                        78*************************9.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.628109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-12112161No hitNo description
Gene3DG3DSA:4.10.280.101.4E-14113170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14113167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.0E-5216263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MWDGGVEHGS QEAAHQLLPW LGAAPFSEPA AVAGLGAAMG AYACDGVGGL GHGGVFGFGF  60
DAAVQQQQQQ QRAADGSGKA VVVSGLLGSL QAELGRMTAR EMMDAKALAA SRSHSEAERR  120
RRQRINGHLA RLRSLLPNTT KTDKASLLAE VLDHVKELKR QTSAMMAATD ADADADDEGA  180
GRTQAQAQAQ LLPTEADELC VDAGADGAGR LVVRASLCCE DRPDLIPDIV RALAALQMRA  240
RRAEITTLGG RVRSLLLITA DRRADVQRGG GGGGGDGDDD EEEEDEEEGG ERAASHRRHE  300
CIASVQEALR GVMDRRTASS CDTSSSGGGG GSIKRQRMNY GAQEQCSV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G176141
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G176141_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711890.0EU971189.1 Zea mays clone 359116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667787.10.0PREDICTED: uncharacterized protein LOC100279487 isoform X1
TrEMBLA0A096T0510.0A0A096T051_MAIZE; Uncharacterized protein
STRINGGRMZM2G176141_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-46bHLH family protein