PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G175480_P01
Common NameZEAMMB73_900801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 358aa    MW: 40270.3 Da    PI: 9.1987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G175480_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13263310355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h   Er+RR+++N++f  Lr++lP++      K +Ka++L +A +Y++ Lq
  GRMZM2G175480_P01 263 QQHVLSERKRREKLNDSFKALRTVLPPS-----SKKDKASTLMRARDYVSTLQ 310
                        568999********************98.....699***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.40E-12258314No hitNo description
SuperFamilySSF474592.36E-17258329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14263324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11263310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-14266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDGGSSWLPF LGRGIGDGVS GSSGSEVQRK EDDDLPISSQ VEEELRQAMI MHARTLVICN  60
CFTFFFYLLM GMERTGHPAE RETTTALPPS SESSMFRSFP GSPADEASSL RPRSSNNNST  120
TANSYHHHPA EVSSQSHLTE LSPVTYGGGH RHCDDHQCYV NLDTILKLDD EFKRCHDEQP  180
HNERAQHKNG FRGGAFVPYT RHLGPKKKPK PPAGSGGQRA IKAAMAALAR MHMVRLAQWQ  240
CYQMELVVAP APPTGGINGN NQQQHVLSER KRREKLNDSF KALRTVLPPS SKKDKASTLM  300
RARDYVSTLQ SRVSELEEKN RMMLVQLQHR RNDVSPNKIE VDIRSNREEI RKHDRNFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273ERKRRE
2269274RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G175480
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G175480_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656207.10.0PREDICTED: uncharacterized protein LOC103635561
TrEMBLK7UYV00.0K7UYV0_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G175480_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1996222
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-18bHLH family protein