PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173862_P01
Common NamebHLH79, LOC103636607, ZEAMMB73_848631, Zm.67534
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 297aa    MW: 32383.8 Da    PI: 10.3009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173862_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.9e-08122167654
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +rEr RR+r+ ++f+ L  llP+     s K  K +i+  A  Y+++L
  GRMZM2G173862_P01 122 IMRERLRRERLSQGFADLHALLPHG---ASSKGGKNDIVGAAAGYVREL 167
                        68**********************6...699999999999999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-13116185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.82116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-5122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-5122167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9122184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDPFYFGPDQ LDAAAVDEDY LTSLGLVVLS PEPVAPLPGG AFEAYQRRAP ALLEHSLQTM  60
SRRYSGEHNM HRRMFSYLRR VAHDAGAAVV AAPAFPAPAR ESVPGFGVGT SQAPRSSRFR  120
NIMRERLRRE RLSQGFADLH ALLPHGASSK GGKNDIVGAA AGYVRELVAR KEQLSARNQE  180
LLEKAASRWK QQGGTRSGVG RGMVVKVQAE SQDHSMALGA FVRVLQRLKA MEAGLQVTAI  240
RTRFSAGGVW MNIGVEGQVS ARDVDKSITN ALIELEGNDP RSSKPRFSCQ VETVQMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.675340.0endosperm| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173862
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173862_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9488630.0EU948863.1 Zea mays clone 388069 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657188.10.0PREDICTED: transcription factor bHLH92-like
TrEMBLK7VC470.0K7VC47_MAIZE; BHLH transcription factor
STRINGGRMZM2G173862_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1534134
MonocotsOGMP127302432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-06bHLH family protein