PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173090_P01
Common NameZEAMMB73_949484
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 365aa    MW: 39945.7 Da    PI: 4.9423
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173090_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind85.47.6e-27511562101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT......XTTSEEEEESXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks......kekiweFkhksFk 87 
                        Fl k++e++ed++++ +isw +  nsfvv+d++ fa   Lp+ Fkh nf+ F+RQLn+Y  + +++   +++       +++ weF+h  F 
  GRMZM2G173090_P01  51 FLAKTFELVEDPATDAVISWGAARNSFVVWDPHAFAAGHLPRRFKHGNFSTFLRQLNTYVRNHISQFVINKHCngfrkvSPDRWEFAHTDFL 142
                        9********************999***********************************8777776554433344444359*********** PP

                        XXXXXXXXXXXXXX CS
       HSF_DNA-bind  88 kgkkellekikrkk 101
                        +g+++ll +i+r++
  GRMZM2G173090_P01 143 AGQRHLLVNIRRRR 156
                        ************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-2846155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-4347155IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3048155IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-105174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-2451155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-1089101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-10102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MERPDVTVKQ EEEDEVVVVL DGDGDACGHW PGAGAAPEPW QTPVGSAVPP FLAKTFELVE  60
DPATDAVISW GAARNSFVVW DPHAFAAGHL PRRFKHGNFS TFLRQLNTYV RNHISQFVIN  120
KHCNGFRKVS PDRWEFAHTD FLAGQRHLLV NIRRRRGGAA GSTASPSSAG AGGDRDSELE  180
TLRRDREALA RELTRLRREQ EEARAQLLDM ERRVRGTERR QEQCTAFLAR AIRNPAFLDG  240
LLARRCGAHV EAGRKRRLLD AAAAGPDPAD VLDIEELAMA AGAEVGVASI PAVAAAQISN  300
TANATDMIWY ELLGEEQVEI DAEVHDLVAA AAAATDELAQ PWAEMDEKEV AELVRQIDCL  360
ASPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-214615524129Heat shock factor protein 1
5d5v_B9e-214615524129Heat shock factor protein 1
5d5v_D9e-214615524129Heat shock factor protein 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173090
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173090_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9654390.0EU965439.1 Zea mays clone 286056 heat shock factor protein HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150022.10.0heat shock factor protein HSF30
SwissprotQ5Z6A49e-99HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLK7VH390.0K7VH39_MAIZE; Heat shock factor protein HSF30
STRINGGRMZM2G173090_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1403244
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-41heat shock transcription factor A2