PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G172297_P01
Common NameLOC103648024, Zm.131062
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 519aa    MW: 53720.7 Da    PI: 5.225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G172297_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.8e-12325368654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  GRMZM2G172297_P01 325 LMAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 368
                        589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.50E-14316373No hitNo description
PROSITE profilePS5088815.948319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16322385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9325368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16326381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00169441485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MLPPFGNPLW VPEDMDDQQQ HAPPPTPMEL LTVPAQGHEE QNLLALASAA AVAGAGCVFS  60
SPAMLDDDWY FDPVAAAAAT GAQGHLLLAP PGPVPGPGAG SQMFSLFNVG GAATFDVHGF  120
DIGLGTLGGG SGGDLVPLAG AGNTSNSASF SMSLNAGLLA SSFGGFGTAP AQMPDFGGLG  180
GFDMFNNGAG SSSAAPPPAS ASLTVPFSGR GKPAVLRPLE TFPPVGAQPT LFQKRALRRN  240
GGGEDYDKKR KAEATAAAAG ASSACGGDDA EDDDGGSIDA SGLNYDSEDA CRGVEDSGKK  300
DGKGSNANSA GDGKGKRKRL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD  360
AIEYLKELLR KIEELQNEVE SSASPASTAS LPPTPTSFRP LTPTLPALPS RVKEELCPSA  420
LPSPTSKQPR VEVRTTREGR EVNIHMLCAR RPGLLLATMR AIEGLGLDVQ QAVASCFNGF  480
SLDIFKAELC KDGPALLLLP EEEIKSVLLQ SAGLHGVAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315330KRKRLPAKNLMAERRR
2315333KRKRLPAKNLMAERRRRKK
3316333RKRLPAKNLMAERRRRKK
4327334ERRRRKKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G172297
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G172297_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9442280.0EU944228.1 Zea mays clone 208163 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670746.10.0PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LSE24e-99ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A096SXT60.0A0A096SXT6_MAIZE; Uncharacterized protein
STRINGGRMZM2G172297_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-76bHLH family protein