PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G170520_P01
Common NameLOC103646101, Zm.132503
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 307aa    MW: 32321.9 Da    PI: 7.4261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G170520_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05526223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ C+++F ++  L  H+r H
  GRMZM2G170520_P01  5 TCKLCSRRFASPRALAGHMRAH 26
                       7*******************99 PP

2zf-C2H212.60.00042227249123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+C ++F++   L  H r+H
  GRMZM2G170520_P01 227 HECPYCFRVFPSGQALGGHKRSH 249
                        79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868431IPR007087Zinc finger, C2H2
SMARTSM003550.05426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.56E-7526No hitNo description
PfamPF138941.8E-4526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.56E-7161185No hitNo description
PfamPF139121.2E-10165190IPR007087Zinc finger, C2H2
SMARTSM0035541166186IPR015880Zinc finger, C2H2-like
SMARTSM003550.13227249IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-11227249IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871227249IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAKSTCKLCS RRFASPRALA GHMRAHSMAS AKSQISSASS ASTSITASGI DADKKRGPVR  60
GHALRENPKR RGRLDDSDRE SETTDYYSPS PDAKRSHAGS GDAEPVSSVS DAATPEEDVA  120
LSLMMLSRDS WPAPPPYSYR LDSDDDDESD ARPAVVAATA QKRTRYECPA CKKVFRSYQA  180
LGGHRASNVR GGRGGCCAPP LSTPPPAPLQ PLPECEGSEE DSKAQPHECP YCFRVFPSGQ  240
ALGGHKRSHL CSAAAAAAAA APVTSGADPS ITMRSLGFID LNLPAPFDDV EVSAMSDPFL  300
SSKPAGS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G170520
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G170520_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698780.0EU969878.1 Zea mays clone 336750 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669045.10.0zinc finger protein ZAT1
TrEMBLA0A1D6E3W30.0A0A1D6E3W3_MAIZE; Zinc finger protein ZAT9
STRINGGRMZM2G170520_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-33C2H2-like zinc finger protein