PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G170232_P01
Common NameZEAMMB73_929075
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 131aa    MW: 14375.6 Da    PI: 9.1085
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G170232_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP58.92.1e-181712273
                TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec 73
                       +Rls+ +a++f +Lqd+LGfdk+skt+ WLl q+kp i+ l++                     + s++s c
  GRMZM2G170232_P01  1 MRLSVGVAREFLALQDRLGFDKASKTLKWLLAQSKPPIDCLVDAadqvavvtggrptlvkgreqG-SNSSIC 71
                       8*****************************************99666666655555555555422.222233 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-16189IPR005333Transcription factor, TCP
PROSITE profilePS5136921.427141IPR017887Transcription factor TCP subgroup
SMARTSM002712.8E-589128IPR001623DnaJ domain
PROSITE profilePS5007610.95590131IPR001623DnaJ domain
PfamPF002261.2E-1291126IPR001623DnaJ domain
CDDcd062574.33E-1591126IPR001623DnaJ domain
SuperFamilySSF465653.01E-1491127IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.4E-1491126IPR001623DnaJ domain
PRINTSPR006251.3E-1092110IPR001623DnaJ domain
PRINTSPR006251.3E-10110125IPR001623DnaJ domain
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MRLSVGVARE FLALQDRLGF DKASKTLKWL LAQSKPPIDC LVDAADQVAV VTGGRPTLVK  60
GREQGSNSSI CCLTDSRWDK SLNCSKCVTY CFQILGVGKT TSQQEIKKAY HKLALRLHPD  120
KNPGDEVVSQ P
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.398044e-99tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G170232
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G170232_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614989e-97EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7277629e-97KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148951.23e-38teosinte branched1 protein
TrEMBLA0A1D6PWT61e-47A0A1D6PWT6_MAIZE; Chaperone protein dnaJ 6
STRINGGRMZM2G170232_P011e-92(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.19e-13TCP family protein