PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G166687_P01
Common NameLOC100282571, TCP11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 240aa    MW: 26112.4 Da    PI: 4.9987
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G166687_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.23e-3475170377
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec. 73 
                         ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl q+kpai+ l++                     +s+s+  c 
  GRMZM2G166687_P01  75 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLAQSKPAIDRLVDAadqaavvtgggptlvkgrgeGSNSS-TCc 165
                        689************************************************************6666666666666666665433333.333 PP

                TCP  74 .eaes 77 
                         ++++
  GRMZM2G166687_P01 166 lTDSR 170
                        32222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.36676134IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-3276147IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPSTAMSWDG YGAQIFLADM SFHHQDTLEA VFQQPAETTL LQAPAGEKEL PSNGSPPVVD  60
DAGVQAAAVL RKRPFRTDRH SKIRTAQGVR DRRMRLSVGV AREFFALQDR LGFDKASKTV  120
NWLLAQSKPA IDRLVDAADQ AAVVTGGGPT LVKGRGEGSN SSTCCLTDSR EELATEKGRS  180
RAGDAGLDWP PPLIEEHGCG ELGWIMSEAT ATPEQDGLEC YYQYCLQLEE LMRCNGGMPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1481134154Putative transcription factor PCF6
5zkt_B3e-1481134154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.398040.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G166687
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G166687_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614980.0EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148951.21e-179teosinte branched1 protein
TrEMBLA0A060D6L21e-178A0A060D6L2_MAIZE; TCP transcription factor (Fragment)
STRINGGRMZM2G166687_P011e-178(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-26TCP family protein