PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165972_P02
Common NameLOC100280131
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 384aa    MW: 43268.5 Da    PI: 5.0741
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165972_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.68e-33441352102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+++++ d++++e+isw + gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++l
  GRMZM2G165972_P02  44 FLTKTFDLVADPATDEVISWGRAGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDS---------WEFANEGFLRGQRHL 126
                        9****************************************************************998.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l+ ikr++ 
  GRMZM2G165972_P02 127 LRLIKRRRP 135
                        ******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.35E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDLMLPVTVK EEWPPEEEEE EDVDADADAP RPMEGLHEVG PPPFLTKTFD LVADPATDEV  60
ISWGRAGNSF VVWDPHVFAA VLLPRFFKHN NFSSFVRQLN TYGFRKIDPD SWEFANEGFL  120
RGQRHLLRLI KRRRPAPPPP YLQASQSQGS CLEVGRFGGL DGEMERLRRD KSILLAEVVK  180
LRQEQQSTRA GMRAMEERLR HAEHKQVQMM GFLARAVQSP DLFQLLAQQQ ARRRELEGAA  240
LLSAASRKRR RPIGAAPANG GLQQQEEEQQ QGDDDDPTAT RALFAELDER GTTSELENLA  300
LNIQGLGKRR QDGSEKQGGR ARSQQQGGFE TAELTDDFWE ELLNEGMKGG AEAETLPPER  360
RRPAWYVDAL AQKLSSMSNN TTAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254213318120Heat shock factor protein 1
5d5u_B2e-254213327129Heat shock factor protein 1
5d5v_B2e-254213327129Heat shock factor protein 1
5d5v_D2e-254213327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132RLIKRR
2231250RRRELEGAALLSAASRKRRR
3246250RKRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165972
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165972_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0556310.0BT055631.1 Zea mays full-length cDNA clone ZM_BFc0084J01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146536.10.0uncharacterized LOC100280131
SwissprotQ8H7Y61e-154HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLK0D9U30.0K0D9U3_MAIZE; HSF13 HSF type transcription factor (Fragment)
TrEMBLB8A2390.0B8A239_MAIZE; Uncharacterized protein
STRINGGRMZM2G165972_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-87heat shock transcription factor A6B