PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165272_P01
Common NameLOC103633075, Zm.86314
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 394aa    MW: 41468.1 Da    PI: 4.7781
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165272_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35451362102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+l
  GRMZM2G165272_P01  45 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANDFFRRGEKRL 127
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  GRMZM2G165272_P01 128 LCDIHRRKV 136
                        ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5841134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.04E-3442134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAEQGGAAGE AAGSDPPAPA PATAPAPAPA LAADAAGQRS LPTPFLTKTY QLVDDPAVDD  60
VISWNEDGST FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKMVP DRWEFANDFF  120
RRGEKRLLCD IHRRKVAPAP AAGLATAAAA AASGAVTVAA APIPMALPVR PASPSLSTDE  180
HVLSSNSGSA EDHPQAAASG SVSASASGDT GEENERLRRE NARLTRELGQ MKKLCNNILL  240
LMTKYASSQQ LDASAALSSV VNCSGESSEA VPAPPPLPPA ILELMPACPG LATAAAGLVA  300
EADPDQASRL FGVSIGMKRM RDDDDTGEEQ ADHGAAADVK TEASDPQHRM EPSPESPDQH  360
PWPIYRPTPV YHSMRPCNGP DQGAGSDQDG SNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-243613412120Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.863140.0endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165272
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165272_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0181990.0BT018199.1 Zea mays clone EL01N0559D07.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652977.10.0PREDICTED: heat stress transcription factor B-2c-like
SwissprotQ652B01e-150HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A096ST910.0A0A096ST91_MAIZE; Uncharacterized protein
STRINGGRMZM2G165272_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-57HSF family protein