PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163745_P01
Common NameLOC103645259
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 230aa    MW: 24689.3 Da    PI: 4.5324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163745_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-172473255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  GRMZM2G163745_P01 24 RYKGVRLRK-WGRWVSEIRMPNS---RERVWLGSYESAEKAARAFDAAAVCLRG 73
                       7******99.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-282484IPR001471AP2/ERF domain
CDDcd000182.19E-182484No hitNo description
PROSITE profilePS5103221.9312482IPR001471AP2/ERF domain
PfamPF008471.8E-102473IPR001471AP2/ERF domain
SMARTSM003802.0E-322488IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-182483IPR016177DNA-binding domain
PRINTSPR003671.4E-82536IPR001471AP2/ERF domain
PRINTSPR003671.4E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDDGAGASRS DDGEVSPRLP AERRYKGVRL RKWGRWVSEI RMPNSRERVW LGSYESAEKA  60
ARAFDAAAVC LRGSRAGSLN FPESPPNVRY VPGALLTPEQ IQAEAARHAN QQLPSRPVAS  120
ALQPAAAPPA GGPSSDRTTL SMPSTDYSSG AAVCGDDEAL DWSFMDALPP MPPASSSVGM  180
GNSAHTVPAA MDDFMYGSPH LVVQPSEDAT QDVIDSDDDH TFISDDLWRF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163745
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163745_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283820.0KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666566.11e-167ethylene-responsive transcription factor ERF018
TrEMBLA0A1D6KNE21e-165A0A1D6KNE2_MAIZE; Ethylene-responsive transcription factor ERF018
STRINGGRMZM2G163745_P011e-166(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP1454744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-24ERF family protein