PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G162409_P03
Common Namepco106271(668)
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 441aa    MW: 48417 Da    PI: 4.9086
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G162409_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-32242296155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWtpeLHerFv+av+ LGGsekAtPk +l+lmk + Lt++hvkSHLQkYR+
  GRMZM2G162409_P03 242 KARMRWTPELHERFVDAVNILGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRT 296
                        68****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.087239299IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-30241298IPR009057Homeodomain-like
SuperFamilySSF466895.55E-17241296IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-24242296IPR006447Myb domain, plants
PfamPF002498.5E-10244295IPR001005SANT/Myb domain
PfamPF143791.2E-21328372IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MERLSTNQLY SSGVPVTVPT SLPCIPVSLD ESFPRLPDAQ SVLMERELRS TPLPPHQTTV  60
APIRGLFHSN TGSVGPLCSP PSVRFSSHSN PEQYPNHNSY NSQVPSTASS STLNYGSQYG  120
GFEPSITDFP RDIEPTWCPD PVESILGYSG DVPAGNNLTG TTSIGASDDL TKQTEWWTEF  180
MNEDWKDMVD NPTSTETQPV GQPVQSSNSV HQSATQQTVS SQSVEPLAVV APSPTAGSNT  240
GKARMRWTPE LHERFVDAVN ILGGSEKATP KGVLKLMKAD NLTIYHVKSH LQKYRTARYR  300
PELSEGSSEK KVASKEDIPS IDLKGSFDLT EALRLQLELQ KRLHEQLEIQ RSLQLRIEEQ  360
GKCLQMMLEQ QCIPGAEKAQ DASTAADELR SPSEIPESST VKEVPENSQN GSTKQTSLNQ  420
VVFVLPWEQM NAIVNFLAKP G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-30241300160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-30241300160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-30241300160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-30241300160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-30241300160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-30241300160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-30241300160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-30241300160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.69290.0ear| meristem| ovary| pericarp| pollen| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G162409
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth. {ECO:0000269|PubMed:26082401}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and fruits (PubMed:18263782). Expressed in the root cap and in the exodermis, sclerenchyma and vascular tissues of the root, in the cortex cells and the stele of lateral roots, in the mesophyll cells of the leaf, in pollen, vascular cylinder of the anther and the veins of the lemma, palea and pistils, and in all node I tissues (PubMed:26082401). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis. PHR2 binding to DNA is repressed redundantly by SPX1, SPX2 and SPX4 in a PI-dependent manner. {ECO:0000250|UniProtKB:Q6Z156}.
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:25657119, PubMed:26082401). Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). Involved in both systematic and local Pi-signaling pathways (PubMed:19704822). Regulates several Pi transporters (PubMed:18263782). Regulates the expression of PT2 (PubMed:20149131). Directly up-regulates SPX1 and SPX2 expression, but PHR2 binding to DNA is repressed redundantly by SPX1 and SPX2 in a PI-dependent manner (PubMed:25271318). The DNA-binding activity is also repressed by SPX4 (PubMed:24692424). Involved in root growth under Pi deprivation (PubMed:18263782). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:19704822, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:24692424, ECO:0000269|PubMed:25271318, ECO:0000269|PubMed:25657119, ECO:0000269|PubMed:26082401}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G162409_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by Pi starvation. {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0677450.0BT067745.1 Zea mays full-length cDNA clone ZM_BFc0148N18 mRNA, complete cds.
GenBankBT0694670.0BT069467.1 Zea mays full-length cDNA clone ZM_BFb0146B10 mRNA, complete cds.
GenBankKJ7268790.0KJ726879.1 Zea mays clone pUT3420 G2-like transcription factor (GLK15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651544.10.0uncharacterized protein LOC100285165 isoform X1
RefseqXP_008651545.10.0uncharacterized protein LOC100285165 isoform X1
SwissprotB8B5N80.0PHR2_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 2
SwissprotQ6Z1560.0PHR2_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 2
TrEMBLA0A1D6HY980.0A0A1D6HY98_MAIZE; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLA0A3L6E4J50.0A0A3L6E4J5_MAIZE; Protein PHOSPHATE STARVATION RESPONSE 2
STRINGGRMZM2G162409_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19713789
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-74phosphate starvation response 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang C, et al.
    Involvement of OsSPX1 in phosphate homeostasis in rice.
    Plant J., 2009. 57(5): p. 895-904
    [PMID:19000161]
  3. Zhang Q,Wang C,Tian J,Li K,Shou H
    Identification of rice purple acid phosphatases related to phosphate starvation signalling.
    Plant Biol (Stuttg), 2011. 13(1): p. 7-15
    [PMID:21143719]
  4. Wu Z,Ren H,McGrath SP,Wu P,Zhao FJ
    Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice.
    Plant Physiol., 2011. 157(1): p. 498-508
    [PMID:21715673]
  5. Chen J, et al.
    OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice.
    Plant Physiol., 2011. 157(1): p. 269-78
    [PMID:21753117]
  6. Wang C, et al.
    Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves.
    New Phytol., 2012. 196(1): p. 139-48
    [PMID:22803610]
  7. Tian J, et al.
    Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice.
    J Integr Plant Biol, 2012. 54(9): p. 631-9
    [PMID:22805094]
  8. Shen C, et al.
    OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.).
    Plant Cell Environ., 2013. 36(3): p. 607-20
    [PMID:22913536]
  9. Wu P,Shou H,Xu G,Lian X
    Improvement of phosphorus efficiency in rice on the basis of understanding phosphate signaling and homeostasis.
    Curr. Opin. Plant Biol., 2013. 16(2): p. 205-12
    [PMID:23566853]
  10. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  11. Shi J, et al.
    The paralogous SPX3 and SPX5 genes redundantly modulate Pi homeostasis in rice.
    J. Exp. Bot., 2014. 65(3): p. 859-70
    [PMID:24368504]
  12. Li S,Wang C,Zhou L,Shou H
    Oxygen deficit alleviates phosphate overaccumulation toxicity in OsPHR2 overexpression plants.
    J. Plant Res., 2014. 127(3): p. 433-40
    [PMID:24687599]
  13. Zhou Z, et al.
    SPX proteins regulate Pi homeostasis and signaling in different subcellular level.
    Plant Signal Behav, 2015. 10(9): p. e1061163
    [PMID:26224365]
  14. Zhang K, et al.
    Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.
    Plant Biotechnol. J., 2016. 14(8): p. 1661-72
    [PMID:26806409]
  15. Cao Y, et al.
    Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.
    BMC Plant Biol., 2016. 16(1): p. 210
    [PMID:27716044]