PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G160902_P01
Common NamebZIP48, LOC107275238, Zm.96666
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 152aa    MW: 16711.8 Da    PI: 9.268
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G160902_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.91.2e-142483463
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                       ++re+r+ +NRe+ArrsR+RK++ ++eL+++++ L+aeN + + ++     + a++++e+
  GRMZM2G160902_P01 24 RRREKRRLSNRESARRSRLRKQQHLDELAQEAALLQAENARVAARAADVASQNARVEQEN 83
                       79********************************************99999999999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-102080No hitNo description
SMARTSM003381.8E-142185IPR004827Basic-leucine zipper domain
PfamPF001701.9E-112383IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.9322386IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-92579No hitNo description
CDDcd147022.13E-132662No hitNo description
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSSSSLSPAG RTSGSDGDSA ADTRRREKRR LSNRESARRS RLRKQQHLDE LAQEAALLQA  60
ENARVAARAA DVASQNARVE QENAVLRARA AELGARLRSV NEVLRVVEEF SGVAMDIQEE  120
VPPADDPLLR PWQLPCYPAA AMPIGAPHML RY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12330RRREKRRL
23743RRSRLRK
33744RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.966660.0ear| embryo| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G160902
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G160902_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0556340.0BT055634.2 Zea mays full-length cDNA clone ZM_BFc0087G10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307445.11e-104uncharacterized protein LOC107275238
SwissprotP240687e-87OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA0A060D7001e-102A0A060D700_MAIZE; BZIP transcription factor (Fragment)
TrEMBLA0A3L6FBI61e-102A0A3L6FBI6_MAIZE; Ocs element-binding factor 1
STRINGGRMZM2G160902_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Representative plantOGRP5511678
Publications ? help Back to Top
  1. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]