PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159937_P01
Common NamebHLH57, Zm.125686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 467aa    MW: 49591.8 Da    PI: 7.5013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159937_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13316362455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  GRMZM2G159937_P01 316 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 362
                        799***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.8E-4040209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-15315366No hitNo description
Gene3DG3DSA:4.10.280.103.1E-16315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16315366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-11316362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAWSETDAAL FAAVLGRDAA HHLSTTPPHQ DAPAASAPEL QARLQDLVER GGAWTYGIFW  60
QESCAGGRAV LGWGDGHCRD GGAPHHDDAD RSVARKRALL RLHALYGGGD DEGADYALRL  120
DRVTAAEMYF LASMYFSFPE GAGGPGHALA TARHAWATVD PAPGWYVRAS LAQSAGLRTV  180
VFLPCKGGVL ELGSAVPVRE TPETLRALQT ALAVARPPAR EECMRIFGQD LSPGGSARAP  240
RSVDNWAPHP HLAAQATAAS ALASKEAAAG HKAPEPPRSI DFSKPGKPGH GQAGGEERRP  300
RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP KISKMDKASL LSDAIAYIQE  360
LEDRLRGGGG GGGGCSAARP DSPDVEVKAM QDEVVLRVTT PLYAHPVSRV FHAIRDAELI  420
VAASDVAVAD EAVTHTLVLR SPGPEQLTAE TVLAAMSRGM TSATPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A6e-21332122192Transcription factor MYC3
4rs9_A6e-21332122192Transcription factor MYC3
4rqw_B6e-21332122192Transcription factor MYC3
4rqw_A6e-21332122192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297305RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1256860.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159937
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159937_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680150.0EU968015.1 Zea mays clone 312846 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150726.10.0DNA binding protein
TrEMBLA0A060D7800.0A0A060D780_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G159937_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP94301012
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.16e-54bHLH family protein