PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159456_P01
Common NamebHLH84, LOC100283388
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 86aa    MW: 9690.97 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159456_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-0812531454
                       HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                       d+iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  GRMZM2G159456_P01 12 DEINELISKLQALLPESSrRRNASRSSASKLLKETCAYIKSL 53
                       68**************6647777889***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.832153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-91268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-81272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-61253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSSGRRGRIS DDEINELISK LQALLPESSR RRNASRSSAS KLLKETCAYI KSLHREVDDL  60
SERLSGLMST MDNDSPQAEI IRSLLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.97081e-146meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159456
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159456_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9645851e-144EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
GenBankBT0639071e-144BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149761.14e-54DNA binding protein
RefseqXP_002468422.14e-54hypothetical protein SORBIDRAFT_01g045690
RefseqXP_008677317.14e-54PREDICTED: DNA binding protein isoform X1
SwissprotA2XD151e-35ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R471e-35ILI3_ORYSJ; Transcription factor ILI3
TrEMBLB6THX05e-54B6THX0_MAIZE; BHLH transcription factor
TrEMBLC5WVX85e-54C5WVX8_SORBI; Putative uncharacterized protein Sb01g045690
STRINGSb01g045690.11e-53(Sorghum bicolor)
STRINGGRMZM2G159456_P011e-53(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1953822
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-24bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]