PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G158162_P01
Common Namepco092640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 963aa    MW: 105141 Da    PI: 6.7956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G158162_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.5e-19370469198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  
  GRMZM2G158162_P01 370 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-P 459
                        99**************************555567778***************9989999999***9.********************887.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        +++lv+++++
  GRMZM2G158162_P01 460 GGKLVMGFRK 469
                        8878888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-31362479IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-21367470IPR015300DNA-binding pseudobarrel domain
CDDcd100178.34E-24368469No hitNo description
PfamPF023623.8E-16370469IPR003340B3 DNA binding domain
SMARTSM010192.1E-22370470IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603370471IPR003340B3 DNA binding domain
PROSITE profilePS5105014.706631681IPR011124Zinc finger, CW-type
PfamPF074961.1E-10636678IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009001anatomyfruit
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MAMAGAGAAA AAAKRCMNPA CGALPASSVV VGAGGDWRKG WPLRSGGFAL LCDKCGLAYE  60
QFVFCDIFHQ KESGWRDCSF CGKRLHCGCV ASKNSYDLLD SGGIQCVTCM KNSAAQSASG  120
QVVPKLFPCP NNLLFFGKSD ELLSSRKFEQ PPSLMLDSRN DDIAIVNKSS HLFMVSGIEA  180
GQSSNILRQK EIENGPRQIK WEQPTLNIGD MGRPLLTRSQ SALESPQCTR RDDNKDPTTD  240
STTSESFPEA CLSMNLGIAN NGNRMEATST AERPMLSPTT AIAEGRELTT ALSPFQHAQR  300
ARHFLTRPPR VGEGAAFDPT RDMFPHLRVA RPPAEGRGRN QLLPRYWPRI TDQELQQISG  360
DSNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGRPLTIQ DARGKEWHFQ  420
FRFWPNNNSR MYVLEGVTPC IQSLQLQAGD TVTFSRIDPG GKLVMGFRKA TNTVSLPDSQ  480
ISAIANGSLL SETLFSTANE SIGVVSGYPG FLHSIKGAAD FHPSSLYDHH INSADGDVSW  540
NKADKFGSRP DEGSLQFLQK RSRNIGSKSR RFLIDAEDAM ELKLTWEEAQ ELLRPAPTAK  600
PTVVMIEDYE FEEYDEPPVF AKRSIFTIRA TGEQDQWIQC DECSKWRRLP LNVIVASKWT  660
CTDNSWDPKC CSCSAPEELT PKELQSVMQQ YEEMRRRKGS YGLKLNVAEM DASSFDALAT  720
GAVFGEVGNQ GTASVATTTR HPRHRPGCTC IVCIQPPSGK GPKHNPACTC NVCMTVRRRF  780
KTLMMRKKQR QSEREEAEAS KKIAWVNRDE PEGSSLSRSP QTLDTTRDSS DVTMFDKVAA  840
DVNKGHIDLN FHPAAPAVRG AGDQGQNGAQ QPRAVSMMGL LEVASRPLDN YMKQNGLTSL  900
AGEQGGGSSS TATVPPAPVE SEDRTSDEGR VASAEREADA MAIDEAGENQ QDKPADSAAA  960
AAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-1336945613102DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1776787RRRFKTLMMRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.141020.0ear| embryo| endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G158162
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G158162_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629270.0BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168259.10.0uncharacterized protein LOC100382023
RefseqXP_008651637.10.0PREDICTED: uncharacterized protein LOC100382023 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLC0P3Q80.0C0P3Q8_MAIZE; Uncharacterized protein
TrEMBLK0DCR10.0K0DCR1_MAIZE; ABI32 ABI3VP1 type transcription factor (Fragment)
STRINGGRMZM2G158162_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2