PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G155217_P01
Common NameLOC100383774
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 463aa    MW: 48933.6 Da    PI: 6.8326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G155217_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.5e-053463831254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +++eYIk L
  GRMZM2G155217_P01 346 RKEKLGDRITALQQLVAPF-----GKTDTASVLHETIEYIKFL 383
                        677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-5344387No hitNo description
Gene3DG3DSA:4.10.280.104.6E-8344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-11344403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGDHAEMLHA APAMYNGAGA APHGGWWNTA VPATTCSTTE LAGFTTWSSA LAASYDLAAE  60
GTKAKSAAAS SESPGNNSSV TFQEPACVTD PPGVGTAVVQ VQQPLATGYA DWTHPYMSSG  120
ATTLHGFLQD GHQQDMSSAT EQSSMTASSL MNPSSNNLAL ALQGHHHHHQ EHEHQQQMLS  180
SFGSELLLSP TTSPYGFQSS LLRSLMEPAA ATKQALPGYQ QQQYDQYQQQ MGMGQARFAP  240
PAAGAASREA LQFSNDALFS WNPSAAGFGF GLGVPPAPDQ ASSVRSVVKP SPAAARATAT  300
LALKTALEGV GESASSIITK KKANGEPALK KPRLETPSPL PTFKVRKEKL GDRITALQQL  360
VAPFGKTDTA SVLHETIEYI KFLHDQVGVL SAPYLKNNGH HQVLRHLKSS SPDKSSKDDD  420
SHASEISLKG RGLCLVPISS TFAVASEVPV DFVWSTPFAA NFR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.323110.0leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G155217
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G155217_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682560.0BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668450.10.0PREDICTED: uncharacterized protein LOC100383774 isoform X1
TrEMBLA0A096SLN20.0A0A096SLN2_MAIZE; Uncharacterized protein
STRINGGRMZM2G155217_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1484144
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-43bHLH family protein