PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G155043_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 489aa    MW: 51403.4 Da    PI: 9.0575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G155043_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14146192455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  GRMZM2G155043_P01 146 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILLDATRYLKELQ 192
                        5999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.885142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-18146204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-15147196No hitNo description
PfamPF000107.2E-12147192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-15148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEDSSLFMQW AMDTLQHENN PAPASAAAVH GGFSEATFPS LKALREASHA AEMVQELIAD  60
ADVVRHAPNS WNSGDNTTAN YNVPAGWGFG GATAASALPG SHGMMEAPPA MATRGRPPPG  120
LVYRLPPTRR AGLKSLGSMA AAYAKDHIIA ERKRREKINQ RFIELSTVIP GLKKMDKATI  180
LLDATRYLKE LQEKLKDLEQ RKEAGGGSIE TLVLVKKPCL HAAAARDDDG GSSLPASPPA  240
GTPTEGKRLP EIEVQFSELE KTVAHTCDTI HSFVLCGDTT PSPRHSEVRG GEAAPSAHHA  300
NASGGESSPS PALVLDNVDR RPRVVLAAAP ANACDVVSPS PHASGSAEPS RACELAIRSR  360
ASVSGKLPHF LRLSRNALKS KPRRKVLLYF KAAAQIFLGV EVVHGGAVSA SDALLRWGWG  420
IITCVGARER TPGMALGSGG GVRALPGGWQ INAGAAAVEE GFTVTADDIV GRLSSALLRI  480
TSIGGCKRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G155043
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G155043_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666761.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A096SLK30.0A0A096SLK3_MAIZE; Uncharacterized protein
STRINGGRMZM2G155043_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1948822
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-17bHLH family protein