PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G154029_P01
Common NameLOC103639011, ZEAMMB73_011508, Zm.4460
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 316aa    MW: 33729.3 Da    PI: 4.7815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G154029_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.2e-052653041054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        rrRR+ri +  + Lr ++P     ++   +  ++L +A+ Y+++L
  GRMZM2G154029_P01 265 RRRRERIQETVAALRNIVPGG---TA--KDATAVLDEAICYLQYL 304
                        9******************96...33..344589********999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.537255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-7265311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-8265312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGDKVNPWCH WPNPQWKFNT ESSAGNLHPP DVGLANADSV ALPAYHLNAA PMPFFAASSI  60
AERPLPMGPR HVTTLAPSFE SPAPCPSRKR PSVLYQKETH GPTAAPLRRS KGPLDPVPEL  120
QGSNETNVTD VGAEETEGVH ENTDEIDALL DSSDSDEGPH ELDRARRQPA AENETSSVES  180
VASAAGSAPP AKKRRLSSCT DRSVVDTASS ARPDHSVEQK PLASDCDAQS CCVGEVVESG  240
RLRFSPGEGE GEVEAAEGDS PDDQRRRRER IQETVAALRN IVPGGTAKDA TAVLDEAICY  300
LQYLKLKVKT LGAASL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.760180.0cell culture| endosperm| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G154029
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G154029_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860360.0BT086036.2 Zea mays full-length cDNA clone ZM_BFc0102K12 mRNA, complete cds.
GenBankBT0854000.0BT085400.2 Zea mays full-length cDNA clone ZM_BFc0007H24 mRNA, complete cds.
GenBankBT0839110.0BT083911.2 Zea mays full-length cDNA clone ZM_BFb0053N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660010.10.0PREDICTED: transcription factor BPE-like
RefseqXP_008660011.10.0PREDICTED: transcription factor BPE-like
TrEMBLK7VCX10.0K7VCX1_MAIZE; Putative HLH DNA-binding domain superfamily protein isoform 1
STRINGGRMZM2G154029_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1276534
MonocotsOGMP100311820
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]