PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G153454_P02
Common NamebHLH90, LOC100282357
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 374aa    MW: 39945.4 Da    PI: 6.9369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G153454_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13304349655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  GRMZM2G153454_P02 304 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 349
                        689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16301358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.55E-13302353No hitNo description
Gene3DG3DSA:4.10.280.102.5E-16303369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-10304349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMAS SGLLRYRSAP STVLGDLCED FLSSAPRAAS PDAGADNVFS  60
RFLADHHIRD DKPSPLASAA VHFPTETDTA SQQQQQQMMF HSQQQQEMVS AKSGLYRTVN  120
SGVETAAAAG AGGASSSDNA SNLIRQSSSP AGFLDHLNME NGYGAMLRAG MATADSLAGG  180
GSRLKGQLSF SSRQGSLMSQ ISEMDSEEVG GSSPEASGGG GRGYIPGYPM GSGWEDSSAL  240
LSDNLSGVKR PRDSSEPGQS GLTHQFSVPK TSSEMATIEK FLQFQDAVPC KIRAKRGCAT  300
HPRSIAERVR RTKISERIRK LQELVPNMDK QTNTSDMLDL AVDYIKDLQK QVKVLKESQD  360
NCTCSASKNQ QHSC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.647970.0ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G153454
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G153454_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605910.0EU960591.1 Zea mays clone 226472 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148741.10.0DNA binding protein
RefseqXP_008651451.10.0PREDICTED: DNA binding protein isoform X1
TrEMBLB6T6H60.0B6T6H6_MAIZE; BHLH transcription factor
STRINGGRMZM2G153454_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-65bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]