PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G151309_P01
Common NameLOC103635024, ZEAMMB73_877174, Zm.85415
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 437aa    MW: 46209.5 Da    PI: 9.2837
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G151309_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-067496123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++Cgk F r  nL+ H r H
  GRMZM2G151309_P01 74 FVCEICGKGFQRDQNLQLHRRGH 96
                       89*******************88 PP

2zf-C2H214.88e-05151173123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  GRMZM2G151309_P01 151 WKCDKCNKRYAVQSDWKAHAKTC 173
                        58******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-77396No hitNo description
Gene3DG3DSA:3.30.160.601.2E-57496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6147496IPR007087Zinc finger, C2H2
SMARTSM003550.0127496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-5139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.45E-7146171No hitNo description
SMARTSM00355110151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MASEAAAASV ISRNPCLFAP PLITNQQQPS HQEPQQEMPL PPPAKKKRNL PGTPDPAAEV  60
IALSPRTLLA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW KLRQRSAGKE PRKRVYVCPE  120
KTCVHHNPCR ALGDLTGIKK HFCRKHGEKK WKCDKCNKRY AVQSDWKAHA KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEETARQL NAAAAATSHL NNNAHVVVGL SLPSMVGHIN  240
GATGSILLPG APPQLYADLF APAPPQLSWP CELTSAAAAA SSSAAASGKQ KTDSVPSVFS  300
GYPHANLAVP GAGAADMSAT ALLQKAAQMG AVTSGSGSVI MTTTAGGHHQ PSDCGAGLLF  360
SALTQQNATN LISGSGTSTL TTSQLTATGG NMPYDVLSAV RHAGLKDAAV AVGREETRDF  420
LGVGVQALCS SSLNGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34147208364Zinc finger protein JACKDAW
5b3h_F2e-34147208364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G151309
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21265895}.
UniprotTISSUE SPECIFICITY: Highly expressed in vegetative organs and at lower levels in flowers and siliques. Expressed predominantly in roots. In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000305|PubMed:21265895}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G151309_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-178HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655812.10.0zinc finger protein NUTCRACKER
SwissprotQ9FFH31e-121IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLK7URN20.0K7URN2_MAIZE; DNA binding protein, mRNA
STRINGGRMZM2G151309_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-114C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]