PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G150729_P02
Common NameLOC100272342
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 273aa    MW: 28923.4 Da    PI: 7.8239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G150729_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000171632021155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +R +++ +++  L++l+ +      +K + a++L +A  +Ik+L+
  GRMZM2G150729_P02 163 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIKHLH 202
                        6889999**********999.....9*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.623152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-9163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-6163219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MWNCSSLLLQ YGDDYAARCE SSSSPAGAVG LDRILAAEYG RFDSLDLSPP PPLHGLQAQT  60
LFAIHGSSEN CLGIGANPIY STEARPAFSQ LSFTQPAADT AAHYSMKWTA AGETATGGGG  120
SRLRGSKRLK TKTPATAQGP QHHGQRCSPK PTTSQSIKAP PCKRSQKLGD KITALQQLVS  180
PYGKTDTASV LHEAATCIKH LHEQIQILTA SYPELSSPAS QQDTGDEEGG ATGLRRRGLC  240
VASLSPAVVQ LVSAEAALGN RDTEDHWRWL GTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129RLRGSKRLK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G150729
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G150729_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750580.0EU975058.1 Zea mays clone 466236 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666333.11e-150PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLA0A096SIM70.0A0A096SIM7_MAIZE; Uncharacterized protein
STRINGGRMZM2G150729_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1412633
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-21bHLH family protein