PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149940_P02
Common NameLOC100286038
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 449aa    MW: 49198.8 Da    PI: 6.463
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149940_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.6e-15316411395
                        EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk +gL+++D++++++++ 
  GRMZM2G149940_P02 316 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPVVWNFKYRYwpNNKSRMYILE-STGEFVKRHGLQAKDILIIYRNK- 403
                        789******************999886432..34556777775555*********887888888888.9*******************654. PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        +++++v +
  GRMZM2G149940_P02 404 KSGRYVAR 411
                        77766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-24306416IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17312410IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-9314416IPR003340B3 DNA binding domain
PROSITE profilePS508638.614314416IPR003340B3 DNA binding domain
PfamPF023621.3E-11316411IPR003340B3 DNA binding domain
CDDcd100175.50E-19318409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MANANGSSTG AGHSDLVRAI SHEQHQAFMA SVPRAAPGGV NVHHQQHFHQ YPAGLIPAPV  60
ALPVHAPVSS QTSPYSAQIA VPPPPPPLIA SPDHRLHSLP PTGCYQLDYS PYGNAAAPSQ  120
QHTSAIRGFA DWGTHSNALM SLAHATSFGN NGSSNINNNG LLHQNLSPYT THTWTTTYVQ  180
RPYNTAVYAP ATMNMLQTPP FHSNSHEKES GAVFSNSFNM APSVTPTSPF QLMSPSSTNY  240
TSTQIFEETN NLEMSSYGVM ILQDTSRVFG GGDNESNNSE EPDPKPAVEM EDLNQGNDHT  300
SNKTANCQDY RMVLRKDLTN SDVGNIGRIV LPKKDAEPNL PILEDKDGLI LEMDDFELPV  360
VWNFKYRYWP NNKSRMYILE STGEFVKRHG LQAKDILIIY RNKKSGRYVA RAVKAEDIAP  420
PECECVEAGN PREECGFSVS PSINKKIIT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.988340.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149940
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149940_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431380.0BT043138.2 Zea mays full-length cDNA clone ZM_BFc0107M18 mRNA, complete cds.
GenBankJX4699730.0JX469973.1 Zea mays subsp. mays clone UT3236 ABI3VP1-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152398.10.0B3 DNA binding domain containing protein
TrEMBLA0A096SI240.0A0A096SI24_MAIZE; Uncharacterized protein
STRINGGRMZM2G149940_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-36B3 family protein