PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149040_P01
Common NamebZIP58, LOC100273514
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 374aa    MW: 40313.2 Da    PI: 7.1835
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149040_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.93e-10169215551
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                        kr++r + NR +A rs +RK  +i eLe+kv++L++e ++L  +l  
  GRMZM2G149040_P01 169 KRAKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 215
                        9****************************************988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.1E-15165229IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53167230IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-11169220No hitNo description
Gene3DG3DSA:1.20.5.1704.0E-9169223No hitNo description
PfamPF001704.1E-9169213IPR004827Basic-leucine zipper domain
CDDcd147038.38E-22170219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAMPPKPGDP PQRSPARSPN LNLPCPLPPV PGGAPPPPQQ QPGAGLPPPR VGHHRRARSE  60
VAFRFPDDLP GGGGGGFDEI GSEDDLFSTF MDMDKIAGAD RDRAAETSSP PRPAKHRHSV  120
SFDGFGMGAA AGGPGGQQDG GGGMFGEVME AKKAMSSEQL SELAAIDPKR AKRIIANRQS  180
AARSKERKAR YITELERKVQ TLQTEATTLS AQLTLFQRDT TGLSAENAEL KIRLQAMEQQ  240
AQLRDALNDA LRQEVERLKI ATGEMSKSNN EHFNMGMQHV SYSPSFFQLS EQHTVQQHGN  300
IQLPHHFQQP PLNVPSHQML SHPNSLSNMV QQDSLGRLQG LDIGKGSMAV KSEAEVVVKS  360
EGSSISAGES NTTF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1555410.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149040
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149040_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0413140.0BT041314.1 Zea mays full-length cDNA clone ZM_BFb0062I03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141404.10.0uncharacterized LOC100273514
SwissprotQ6S4P41e-137RF2B_ORYSJ; Transcription factor RF2b
TrEMBLB4FW260.0B4FW26_MAIZE; BZIP transcription factor
STRINGGRMZM2G149040_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.17e-84bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]