PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148022_P02
Common NameLOC100501397, ZEAMMB73_933782
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 778aa    MW: 84779.1 Da    PI: 7.5194
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148022_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.82.9e-32442620199
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................s 66 
                        aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el  +                           
  GRMZM2G148022_P02 442 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIDELSADreegqpaaeaadatttepaeqvtstsY 533
                        689**************************************************************998655444444433333333333330 PP

                TCP  67 sssaseceaesssssasnsssg...................................................................... 88 
                                             g                                                                      
  GRMZM2G148022_P02 534 ---------------------Gfaiggvagsfmphsvgaddvsgsgsgsgsgnvkslfpsssttsttptqdeyrgsppdllsrttssnqpqe 604
                        .....................13333444444444444444444444444455555555433333333333344444444444444444444 PP

                TCP  89 .....kaaksaakskk 99 
                             ++ ++++++++
  GRMZM2G148022_P02 605 lcltlQSTNNHHHQQQ 620
                        4444333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520584.91E-122294IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.1E-142388IPR032675Leucine-rich repeat domain, L domain-like
PfamPF036342.2E-32444610IPR005333Transcription factor, TCP
PROSITE profilePS5136933.017445503IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MSTLGNTVEG QRQSLDETRQ LLDQRNISGA IPAALGNAKS LKFLRLDHNR LKGPIPRELA  60
GLPNLGIVDF SNNDLCGAIP TDGAFQNIPR SSFLIMKKQA KILWLRLICV AFPTTYLLHL  120
VHLALANLVC FASCSPPIRA NAHMAHSELL LIVGSDCSTI RSELWWSGLS CSHVRLLQRS  180
SRPIKISRLW HLSVIHIVYE NLLRIKGSML YIYYVKRVMP CGSKVGKMDI GGGPEEDVIQ  240
NQYEFLIQRW GDLPLFSQRR GEVLTLAGDG EPYQVHGIGA KILYGERALG LYLAKHNNKE  300
STDMHPLKPD EMVDHLKHGL GKEGHVFTYI THEQGSAEVS TLKLEEDKNQ LSKGLDPWSN  360
PTAATSTLHY LLQEKERAQA HEQLQIYHQQ GFSYLQHRRR QQQQQQQPRA AGAGSDGVSS  420
GESTPVDALA TAFGSGRIVR SAAGRKDRHS KVCTARGLRD RRVRLAAHTA IRFYDVQDRL  480
GYDRPSKAVD WLIRNAKAAI DELSADREEG QPAAEAADAT TTEPAEQVTS TSYGFAIGGV  540
AGSFMPHSVG ADDVSGSGSG SGSGNVKSLF PSSSTTSTTP TQDEYRGSPP DLLSRTTSSN  600
QPQELCLTLQ STNNHHHQQQ QQQQIFSHVS PNHHGSMISV AGVQGWPEAH GQRMPPWHAP  660
ENSGAGDDGR GAAGNGDSYM FGVPGPRQGL DHLQGQLIFS QGEPLQSSGG GWPSSSARAW  720
LDPLVAIHQH QPSTMSGQVG FGHLVGGAGS GFMGFLAPPA QRLQLQSEDE QGSEAMRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-19450503154Putative transcription factor PCF6
5zkt_B6e-19450503154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.373030.0ear| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148022
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148022_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852120.0BT085212.2 Zea mays full-length cDNA clone ZM_BFb0334P17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.10.0transcription factor PCF7
SwissprotQ8LT051e-148PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A1D6GBE20.0A0A1D6GBE2_MAIZE; Transcription factor TCP4
STRINGGRMZM2G148022_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Representative plantOGRP1436733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-32TCP family protein