PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G147685_P01
Common NameZm.12852
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 624aa    MW: 63407.3 Da    PI: 8.7232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G147685_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12380425655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er RR+++++ f++L  llP++   p  K +Ka+i+ +Av YIk L+
  GRMZM2G147685_P01 380 IFTERERRKKMKNMFSTLHALLPQL---P-DKADKATIVGEAVTYIKTLE 425
                        557*********************7...3.9****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.459374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14378438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14379438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12379429No hitNo description
SMARTSM003535.3E-9380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9382425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MSQEGANLPQ EVVGSHDQAT APHGSIPAPA DSNPSSVSNL ASAVNNGGSS ECASPAVLSA  60
GEDNNAASSK TASPAVLSAG EDNNAASSKT ASPAVLHAAD DNNAASKIAG PAVLLAGEEN  120
KAKLKLASPA SLLAGEEKGN NADEFKLASP RMLHDCDDNN AGSHAGVRNC NAAQSKLANP  180
AVLHAGDDKK GGSKIAGPEV PHASVTSTTG SKLNGPAALH AGNDNDSGGS RLPNPAVLHA  240
SKDMDNNAGR PKFASPVLLH AGEDNKARTK LAIQAGGGGN AGAGSSRLTR SAALHAGKDN  300
GAGSKPAIQV VPRLHAGGKD NNAGSFKAAR PSAADSGESN AKEGKSNVAG EQRAREAGVG  360
CGGGKGNAAA VEDVDHDLHI FTERERRKKM KNMFSTLHAL LPQLPDKADK ATIVGEAVTY  420
IKTLEGTVQK LEKLKLERKR ALAAQQQLMA GAGSNRASSA RHPAPAPSSP SSSSREANVA  480
DMVHGWHAQQ AAANKALAAE AGAGGSSSAA ASLPRGAVPF PAPAAGFQTW SGQNVVVSVA  540
SNEAYINLHS PRQPAGTLTK ALFVLERHRI DVVTTTISTQ DGFHMYGIHA RVNSASASAR  600
FPENLCAEDR FKLAVSEMLQ LINI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.128520.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G147685
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G147685_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872740.0BT087274.2 Zea mays full-length cDNA clone ZM_BFb0025H05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446487.10.0hypothetical protein SORBIDRAFT_06g016740
TrEMBLA0A096SGI10.0A0A096SGI1_MAIZE; Uncharacterized protein
STRINGGRMZM2G147685_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-22bHLH family protein