PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143723_P01
Common NameLOC103649624, Zm.26762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 497aa    MW: 52175.2 Da    PI: 8.682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143723_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-0679101123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ Cgk F r  nL+ H r H
  GRMZM2G143723_P01  79 YVCEVCGKGFQRDQNLQLHRRGH 101
                        9********************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.35E-878101No hitNo description
Gene3DG3DSA:3.30.160.604.7E-679101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.82279101IPR007087Zinc finger, C2H2
SMARTSM003550.008179101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM0035538121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4144176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.35E-8151176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MMLKDLAAIQ QHHHQQQLAA AAADENMSNL TSASGDQASV SSHPVPPPAK KKRSLPGNPD  60
PDAEVIALSP RTLMATNRYV CEVCGKGFQR DQNLQLHRRG HNLPWKLKQR NPKEVVRKKV  120
YVCPEPGCVH HDPARALGDL TGIKKHFSRK HGEKKWKCDR CAKRYAVQSD WKAHSKVCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAVTAAAA VAGQHHPGPA GMLFSQAAGG  240
GDGGAGLHLP PGVLDPSQTL GGGHGMSLQE LCLKREQQQQ QQFAPSSWLT AQHHQQELEL  300
PGSAVFGLAR PLDQQEYMGN STTESTAGLS GFVGFSPSAA GGAAASAHMS ATALLQKAAQ  360
MGATLSRPSN QGQMAGTHSS STTNAGTGTA NAAAAAASNV PGTGAAGALG FGSPHHFGAE  420
ERTTRPADRD AGNGSGNAAA VAAGGGNEGL TRDFLGLRAF SHGDILSMAG FDPCMSSASP  480
AAYEQGHHHP SSKQWHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33152213364Zinc finger protein JACKDAW
5b3h_F9e-33152213364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105118KLKQRNPKEVVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.267620.0ear| embryo| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143723
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143723_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673585.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1D6MHJ00.0A0A1D6MHJ0_MAIZE; Protein indeterminate-domain 11
STRINGGRMZM2G143723_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-102indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]