PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141955_P01
Common Namepco127567(465)
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 206aa    MW: 22945.1 Da    PI: 9.0656
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141955_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.83.4e-7171765170
              YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesast 94 
                          +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++ ++ +++l+e+++ +  l e+++  + +  +  ++ +s++ 
  GRMZM2G141955_P01   7 APADHVCYVHCNFCNTVLAVSVPGNSMLSMVTVRCGHCTNLLSVNLRALMHSVPEQDQLQENIRVHgtLREHHQCGGGHHLELGSS-SSSRF 97 
                        5689*******************************************************999886643444444444333333222.22222 PP

              YABBY  95 svssekl...senedeevprvppvirP.PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          ++ ++   ++ne+    ++ +  rP PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  GRMZM2G141955_P01  98 RLPM-MMsyaPQNEHLLQEQTLNNARPaPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 176
                        3333.44333222222223333456766**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.7E-718176IPR006780YABBY protein
SuperFamilySSF470954.71E-8120170IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.4E-5125170IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSSAQIAPAD HVCYVHCNFC NTVLAVSVPG NSMLSMVTVR CGHCTNLLSV NLRALMHSVP  60
EQDQLQENIR VHGTLREHHQ CGGGHHLELG SSSSSRFRLP MMMSYAPQNE HLLQEQTLNN  120
ARPAPEKRQR VPSAYNRFIK EEIRRIKANN PDISHREAFS TAAKNWAHYP NIHFGLNSGR  180
EGGKNKLVDE AVAAVAVAPK KIQGFY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1180590.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141955
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141955_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0397870.0BT039787.1 Zea mays full-length cDNA clone ZM_BFc0045D16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667127.11e-155PREDICTED: uncharacterized protein LOC100272921 isoform X2
SwissprotQ2QM175e-87YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A096SCT21e-155A0A096SCT2_MAIZE; Uncharacterized protein
STRINGGRMZM2G141955_P031e-146(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.15e-55YABBY family protein